PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo10G0023000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 318aa    MW: 34616.2 Da    PI: 9.7959
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo10G0023000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-09190237455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++iN ++  L+el+P +    sk    a++L + +++++sLq
  Spipo10G0023000 190 SHSLAERARREKINARMKLLQELVPGC----SKISGTAQVLDEIINHVQSLQ 237
                      8*************************9....78899***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-15184254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.86E-9184241No hitNo description
PROSITE profilePS5088814.691186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-15186251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-7190237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-9192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MPEVFRFGEI RRGGREREST AENGSGSFTA LLGLPANRAM ELLHEVETGR GPLIQFADVE  60
RNQKLLDGSC FGRLPTFPSD SDLVERAARF SIFATEDSPR MPSAAVCSAE AVKTERPDSD  120
SNPKSPPPQQ RPPKRKGYCD KKNKLKASGK RPKSRSAGEI SKTVEENDGG EEEKLPYVHV  180
RARRGQATDS HSLAERARRE KINARMKLLQ ELVPGCSKIS GTAQVLDEII NHVQSLQRQV  240
EFLSMRLAAV NPGIDFGGLD SFLATNGGAP RPEQAALWPE AHRPVRLADL LPKPGQQSLW  300
GRGVVVLPGN PTSAANL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913936.11e-89PREDICTED: transcription factor bHLH48-like isoform X1
RefseqXP_010913937.11e-89PREDICTED: transcription factor bHLH48-like isoform X2
SwissprotQ8VZ026e-63BH048_ARATH; Transcription factor bHLH48
TrEMBLD7TI191e-81D7TI19_VITVI; Putative uncharacterized protein
STRINGVIT_08s0007g07870.t014e-81(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.28e-65bHLH family protein